I could be wrong, but I don't think there's any way you can rip those fmv's without having the black frames in them. FFX2MOV merely tracks the locations of the fmv's on the dvd and extracts them. I'm pretty sure it's got nothing to do with adding in the black frames. So even if you could rip the fmv's yourself, odds are they'd still be there.
If the black frames bother you that much (which is understandable), crop them out using avisynth or virtual dub, and then use avisynth and virtual dub to resize the aspect ratios of FFX's fmv's to match FFX-2's. It's true that it takes some work, but it's bound to be much easier and more time effective than looking through an iso of FFX with a hex editor and searching for headers and offsets with the mere
hope of extracting fmv's without black frames.
If you don't know about this already, here's a guide which can help you out.
http://www.animemusicvideos.org/guides/avtech/
and here's a section of the guide that contains some avisynth commands of which you might find useful.
http://www.animemusicvideos.org/guides/ ... atios.html
All you really need to remember is to crop the black borders using either virtual dub mod's crop filter or avisynths crop command: "Crop(x,x,-x,-x)"
and then use avisynths "LanczosResize" command to convert the fmv's into the aspect ratio you want to work with.